Kate Culhane, Dept. of Ecology, Evolution, and Marine Biology, UC Santa Barbara
kathrynculhane@ucsb.edu
Summary
Wrangling data
##### PACKAGES #####
library(tidyverse) # data manipulation & visualization
##### DATA #####
# Stomach pump invert ID (all islands)
diet_raw <- read_csv('data_raw/field/diet_field.csv')
# Site metadata (Naxos)
meta_raw <- read_csv('data_raw/field/naxos_meta.csv')
# Vegetation quadrats (Naxos)
veg_raw <- read_csv('data_raw/field/naxos_veg.csv')
# Pitfall/sticky metadata (all islands)
prey_meta_raw <- read_csv('data_raw/field/prey_meta.csv')
# Pitfall trap invert ID (all islands)
prey_p_raw <- read_csv('data_raw/field/prey_pitfall.csv')
# Sticky trap invert ID (all islands)
prey_s_raw <- read_csv('data_raw/field/prey_sticky.csv')diet <- diet_raw %>%
filter(island == "Naxos")
write_csv(diet, "output/02_diet.csv", col_names = TRUE)prey_meta <- prey_meta_raw %>%
filter(island == "Naxos")
prey_p <- prey_p_raw %>%
filter(island == "Naxos") %>%
mutate(trap_type = "pitfall",
sampleID = paste0("P-", site, "-", trap))
prey_s <- prey_s_raw %>%
filter(island == "Naxos") %>%
mutate(trap_type = "sticky",
sampleID = paste0("S-", site, "-", trap))
write_csv(prey_meta, "output/02_prey_meta.csv", col_names = TRUE)
write_csv(prey_p, "output/02_prey_p.csv", col_names = TRUE)
write_csv(prey_s, "output/02_prey_s.csv", col_names = TRUE)
devtools::session_info()## - Session info ----------------------------------------------------------------------------------------------------
## setting value
## version R version 4.1.0 (2021-05-18)
## os Windows 10 x64
## system i386, mingw32
## ui RStudio
## language (EN)
## collate English_United States.1252
## ctype English_United States.1252
## tz America/Los_Angeles
## date 2021-07-19
##
## - Packages --------------------------------------------------------------------------------------------------------
## ! package * version date lib source
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##
## [1] C:/Users/kathr/Documents/git-repos/lizard-guts-naxos/renv/library/R-4.1/i386-w64-mingw32
## [2] C:/Users/kathr/AppData/Local/Temp/Rtmp4uARiT/renv-system-library
##
## P -- Loaded and on-disk path mismatch.